Don t Know How to Automatically Pick Scale for Object of Type Labelled Defaulting to Continuous
You are reading the work-in-progress second edition of R for Data Science. This chapter should be readable but is currently undergoing final polishing. You can find the complete first edition at https://r4ds.had.co.nz.
Introduction
This chapter will show you how to work with dates and times in R. At first glance, dates and times seem simple. You use them all the time in your regular life, and they don't seem to cause much confusion. However, the more you learn about dates and times, the more complicated they seem to get. To warm up think about how many days there are in a year, and how many hours there are in a day.
You probably remembered that most years have 365 days, but leap years have 366. Do you know the full rule for determining if a year is a leap year1? The number of hours in a day is a little less obvious: most days have 24 hours, but if you use daylight saving time (DST), one day each year has 23 hours and another has 25.
Dates and times are hard because they have to reconcile two physical phenomena (the rotation of the Earth and its orbit around the sun) with a whole raft of geopolitical phenomena including months, time zones, and DST. This chapter won't teach you every last detail about dates and times, but it will give you a solid grounding of practical skills that will help you with common data analysis challenges.
Prerequisites
This chapter will focus on the lubridate package, which makes it easier to work with dates and times in R. lubridate is not part of core tidyverse because you only need it when you're working with dates/times. We will also need nycflights13 for practice data.
Creating date/times
There are three types of date/time data that refer to an instant in time:
-
A date. Tibbles print this as
<date>. -
A time within a day. Tibbles print this as
<time>. -
A date-time is a date plus a time: it uniquely identifies an instant in time (typically to the nearest second). Tibbles print this as
<dttm>. Base R calls these POSIXct, but doesn't exactly trip off the tongue.
In this chapter we are going to focus on dates and date-times as R doesn't have a native class for storing times. If you need one, you can use the hms package.
You should always use the simplest possible data type that works for your needs. That means if you can use a date instead of a date-time, you should. Date-times are substantially more complicated because of the need to handle time zones, which we'll come back to at the end of the chapter.
To get the current date or date-time you can use today() or now():
today ( ) #> [1] "2022-10-15" now ( ) #> [1] "2022-10-15 23:10:52 UTC" Otherwise, there are three ways you're likely to create a date/time:
- From a string.
- From individual date-time components.
- From an existing date/time object.
They work as follows.
From strings
Date/time data often comes as strings. You've seen one approach to parsing strings into date-times in date-times. Another approach is to use the helpers provided by lubridate. They automatically work out the format once you specify the order of the component. To use them, identify the order in which year, month, and day appear in your dates, then arrange "y", "m", and "d" in the same order. That gives you the name of the lubridate function that will parse your date. For example:
ymd ( "2017-01-31" ) #> [1] "2017-01-31" mdy ( "January 31st, 2017" ) #> [1] "2017-01-31" dmy ( "31-Jan-2017" ) #> [1] "2017-01-31" ymd() and friends create dates. To create a date-time, add an underscore and one or more of "h", "m", and "s" to the name of the parsing function:
ymd_hms ( "2017-01-31 20:11:59" ) #> [1] "2017-01-31 20:11:59 UTC" mdy_hm ( "01/31/2017 08:01" ) #> [1] "2017-01-31 08:01:00 UTC" You can also force the creation of a date-time from a date by supplying a timezone:
ymd ( "2017-01-31", tz = "UTC" ) #> [1] "2017-01-31 UTC" From individual components
Instead of a single string, sometimes you'll have the individual components of the date-time spread across multiple columns. This is what we have in the flights data:
flights |> select ( year, month, day, hour, minute ) #> # A tibble: 336,776 × 5 #> year month day hour minute #> <int> <int> <int> <dbl> <dbl> #> 1 2013 1 1 5 15 #> 2 2013 1 1 5 29 #> 3 2013 1 1 5 40 #> 4 2013 1 1 5 45 #> 5 2013 1 1 6 0 #> 6 2013 1 1 5 58 #> # … with 336,770 more rows To create a date/time from this sort of input, use make_date() for dates, or make_datetime() for date-times:
flights |> select ( year, month, day, hour, minute ) |> mutate (departure = make_datetime ( year, month, day, hour, minute ) ) #> # A tibble: 336,776 × 6 #> year month day hour minute departure #> <int> <int> <int> <dbl> <dbl> <dttm> #> 1 2013 1 1 5 15 2013-01-01 05:15:00 #> 2 2013 1 1 5 29 2013-01-01 05:29:00 #> 3 2013 1 1 5 40 2013-01-01 05:40:00 #> 4 2013 1 1 5 45 2013-01-01 05:45:00 #> 5 2013 1 1 6 0 2013-01-01 06:00:00 #> 6 2013 1 1 5 58 2013-01-01 05:58:00 #> # … with 336,770 more rows Let's do the same thing for each of the four time columns in flights. The times are represented in a slightly odd format, so we use modulus arithmetic to pull out the hour and minute components. Once we've created the date-time variables, we focus in on the variables we'll explore in the rest of the chapter.
make_datetime_100 <- function ( year, month, day, time ) { make_datetime ( year, month, day, time %/% 100, time %% 100 ) } flights_dt <- flights |> filter ( ! is.na ( dep_time ), ! is.na ( arr_time ) ) |> mutate ( dep_time = make_datetime_100 ( year, month, day, dep_time ), arr_time = make_datetime_100 ( year, month, day, arr_time ), sched_dep_time = make_datetime_100 ( year, month, day, sched_dep_time ), sched_arr_time = make_datetime_100 ( year, month, day, sched_arr_time ) ) |> select ( origin, dest, ends_with ( "delay" ), ends_with ( "time" ) ) flights_dt #> # A tibble: 328,063 × 9 #> origin dest dep_delay arr_delay dep_time sched_dep_time #> <chr> <chr> <dbl> <dbl> <dttm> <dttm> #> 1 EWR IAH 2 11 2013-01-01 05:17:00 2013-01-01 05:15:00 #> 2 LGA IAH 4 20 2013-01-01 05:33:00 2013-01-01 05:29:00 #> 3 JFK MIA 2 33 2013-01-01 05:42:00 2013-01-01 05:40:00 #> 4 JFK BQN -1 -18 2013-01-01 05:44:00 2013-01-01 05:45:00 #> 5 LGA ATL -6 -25 2013-01-01 05:54:00 2013-01-01 06:00:00 #> 6 EWR ORD -4 12 2013-01-01 05:54:00 2013-01-01 05:58:00 #> # … with 328,057 more rows, and 3 more variables: arr_time <dttm>, #> # sched_arr_time <dttm>, air_time <dbl> With this data, we can visualize the distribution of departure times across the year:
Or within a single day:
Note that when you use date-times in a numeric context (like in a histogram), 1 means 1 second, so a binwidth of 86400 means one day. For dates, 1 means 1 day.
From other types
You may want to switch between a date-time and a date. That's the job of as_datetime() and as_date():
Sometimes you'll get date/times as numeric offsets from the "Unix Epoch", 1970-01-01. If the offset is in seconds, use as_datetime(); if it's in days, use as_date().
as_datetime ( 60 * 60 * 10 ) #> [1] "1970-01-01 10:00:00 UTC" as_date ( 365 * 10 + 2 ) #> [1] "1980-01-01" Exercises
-
What happens if you parse a string that contains invalid dates?
ymd ( c ( "2010-10-10", "bananas" ) ) -
What does the
tzoneargument totoday()do? Why is it important? -
Use the appropriate lubridate function to parse each of the following dates:
d1 <- "January 1, 2010" d2 <- "2015-Mar-07" d3 <- "06-Jun-2017" d4 <- c ( "August 19 (2015)", "July 1 (2015)" ) d5 <- "12/30/14" # Dec 30, 2014
Date-time components
Now that you know how to get date-time data into R's date-time data structures, let's explore what you can do with them. This section will focus on the accessor functions that let you get and set individual components. The next section will look at how arithmetic works with date-times.
Getting components
You can pull out individual parts of the date with the accessor functions year(), month(), mday() (day of the month), yday() (day of the year), wday() (day of the week), hour(), minute(), and second().
datetime <- ymd_hms ( "2026-07-08 12:34:56" ) year ( datetime ) #> [1] 2026 month ( datetime ) #> [1] 7 mday ( datetime ) #> [1] 8 yday ( datetime ) #> [1] 189 wday ( datetime ) #> [1] 4 For month() and wday() you can set label = TRUE to return the abbreviated name of the month or day of the week. Set abbr = FALSE to return the full name.
month ( datetime, label = TRUE ) #> [1] Jul #> 12 Levels: Jan < Feb < Mar < Apr < May < Jun < Jul < Aug < Sep < ... < Dec wday ( datetime, label = TRUE, abbr = FALSE ) #> [1] Wednesday #> 7 Levels: Sunday < Monday < Tuesday < Wednesday < Thursday < ... < Saturday We can use wday() to see that more flights depart during the week than on the weekend:
There's an interesting pattern if we look at the average departure delay by minute within the hour. It looks like flights leaving in minutes 20-30 and 50-60 have much lower delays than the rest of the hour!
Interestingly, if we look at the scheduled departure time we don't see such a strong pattern:
So why do we see that pattern with the actual departure times? Well, like much data collected by humans, there's a strong bias towards flights leaving at "nice" departure times. Always be alert for this sort of pattern whenever you work with data that involves human judgement!
Rounding
An alternative approach to plotting individual components is to round the date to a nearby unit of time, with floor_date(), round_date(), and ceiling_date(). Each function takes a vector of dates to adjust and then the name of the unit round down (floor), round up (ceiling), or round to. This, for example, allows us to plot the number of flights per week:
You can use rounding to show the distribution of flights across the course of a day by computing the difference between dep_time and the earliest instant of that day:
flights_dt |> mutate (dep_hour = dep_time - floor_date ( dep_time, "day" ) ) |> ggplot ( aes ( dep_hour ) ) + geom_freqpoly (binwidth = 60 * 30 ) #> Don't know how to automatically pick scale for object of type <difftime>. #> Defaulting to continuous. 
Computing the difference between a pair of date-times yields a difftime (more on that in Section 18.4.3). We can convert that to an hms object to get a more useful x-axis:
Modifying components
You can also use each accessor function to modify the components of a date/time:
( datetime <- ymd_hms ( "2026-07-08 12:34:56" ) ) #> [1] "2026-07-08 12:34:56 UTC" year ( datetime ) <- 2030 datetime #> [1] "2030-07-08 12:34:56 UTC" month ( datetime ) <- 01 datetime #> [1] "2030-01-08 12:34:56 UTC" hour ( datetime ) <- hour ( datetime ) + 1 datetime #> [1] "2030-01-08 13:34:56 UTC" Alternatively, rather than modifying an existing variabke, you can create a new date-time with update(). This also allows you to set multiple values in one step:
update ( datetime, year = 2030, month = 2, mday = 2, hour = 2 ) #> [1] "2030-02-02 02:34:56 UTC" If values are too big, they will roll-over:
update ( ymd ( "2023-02-01" ), mday = 30 ) #> [1] "2023-03-02" update ( ymd ( "2023-02-01" ), hour = 400 ) #> [1] "2023-02-17 16:00:00 UTC" Exercises
-
How does the distribution of flight times within a day change over the course of the year?
-
Compare
dep_time,sched_dep_timeanddep_delay. Are they consistent? Explain your findings. -
Compare
air_timewith the duration between the departure and arrival. Explain your findings. (Hint: consider the location of the airport.) -
How does the average delay time change over the course of a day? Should you use
dep_timeorsched_dep_time? Why? -
On what day of the week should you leave if you want to minimise the chance of a delay?
-
What makes the distribution of
diamonds$caratandflights$sched_dep_timesimilar? -
Confirm my hypothesis that the early departures of flights in minutes 20-30 and 50-60 are caused by scheduled flights that leave early. Hint: create a binary variable that tells you whether or not a flight was delayed.
Time spans
Next you'll learn about how arithmetic with dates works, including subtraction, addition, and division. Along the way, you'll learn about three important classes that represent time spans:
- durations, which represent an exact number of seconds.
- periods, which represent human units like weeks and months.
- intervals, which represent a starting and ending point.
Durations
In R, when you subtract two dates, you get a difftime object:
# How old is Hadley? h_age <- today ( ) - ymd ( "1979-10-14" ) h_age #> Time difference of 15707 days A difftime class object records a time span of seconds, minutes, hours, days, or weeks. This ambiguity can make difftimes a little painful to work with, so lubridate provides an alternative which always uses seconds: the duration.
Durations come with a bunch of convenient constructors:
dseconds ( 15 ) #> [1] "15s" dminutes ( 10 ) #> [1] "600s (~10 minutes)" dhours ( c ( 12, 24 ) ) #> [1] "43200s (~12 hours)" "86400s (~1 days)" ddays ( 0 : 5 ) #> [1] "0s" "86400s (~1 days)" "172800s (~2 days)" #> [4] "259200s (~3 days)" "345600s (~4 days)" "432000s (~5 days)" dweeks ( 3 ) #> [1] "1814400s (~3 weeks)" dyears ( 1 ) #> [1] "31557600s (~1 years)" Durations always record the time span in seconds. Larger units are created by converting minutes, hours, days, weeks, and years to seconds: 60 seconds in a minute, 60 minutes in an hour, 24 hours in a day, and 7 days in a week. Larger time units are more problematic. A year is uses the "average" number of days in a year, i.e. 365.25. There's no way to convert a month to a duration, because there's just too much variation.
You can add and multiply durations:
You can add and subtract durations to and from days:
However, because durations represent an exact number of seconds, sometimes you might get an unexpected result:
one_pm <- ymd_hms ( "2026-03-12 13:00:00", tz = "America/New_York" ) one_pm #> [1] "2026-03-12 13:00:00 EDT" one_pm + ddays ( 1 ) #> [1] "2026-03-13 13:00:00 EDT" Why is one day after 1pm March 12, 2pm March 13? If you look carefully at the date you might also notice that the time zones have changed. March 12 only has 23 hours because it's when DST starts, so if we add a full days worth of seconds we end up with a different time.
Periods
To solve this problem, lubridate provides periods. Periods are time spans but don't have a fixed length in seconds, instead they work with "human" times, like days and months. That allows them to work in a more intuitive way:
one_pm #> [1] "2026-03-12 13:00:00 EDT" one_pm + days ( 1 ) #> [1] "2026-03-13 13:00:00 EDT" Like durations, periods can be created with a number of friendly constructor functions.
hours ( c ( 12, 24 ) ) #> [1] "12H 0M 0S" "24H 0M 0S" days ( 7 ) #> [1] "7d 0H 0M 0S" months ( 1 : 6 ) #> [1] "1m 0d 0H 0M 0S" "2m 0d 0H 0M 0S" "3m 0d 0H 0M 0S" "4m 0d 0H 0M 0S" #> [5] "5m 0d 0H 0M 0S" "6m 0d 0H 0M 0S" You can add and multiply periods:
And of course, add them to dates. Compared to durations, periods are more likely to do what you expect:
# A leap year ymd ( "2024-01-01" ) + dyears ( 1 ) #> [1] "2024-12-31 06:00:00 UTC" ymd ( "2024-01-01" ) + years ( 1 ) #> [1] "2025-01-01" # Daylight Savings Time one_pm + ddays ( 1 ) #> [1] "2026-03-13 13:00:00 EDT" one_pm + days ( 1 ) #> [1] "2026-03-13 13:00:00 EDT" Let's use periods to fix an oddity related to our flight dates. Some planes appear to have arrived at their destination before they departed from New York City.
flights_dt |> filter ( arr_time < dep_time ) #> # A tibble: 10,633 × 9 #> origin dest dep_delay arr_delay dep_time sched_dep_time #> <chr> <chr> <dbl> <dbl> <dttm> <dttm> #> 1 EWR BQN 9 -4 2013-01-01 19:29:00 2013-01-01 19:20:00 #> 2 JFK DFW 59 NA 2013-01-01 19:39:00 2013-01-01 18:40:00 #> 3 EWR TPA -2 9 2013-01-01 20:58:00 2013-01-01 21:00:00 #> 4 EWR SJU -6 -12 2013-01-01 21:02:00 2013-01-01 21:08:00 #> 5 EWR SFO 11 -14 2013-01-01 21:08:00 2013-01-01 20:57:00 #> 6 LGA FLL -10 -2 2013-01-01 21:20:00 2013-01-01 21:30:00 #> # … with 10,627 more rows, and 3 more variables: arr_time <dttm>, #> # sched_arr_time <dttm>, air_time <dbl> These are overnight flights. We used the same date information for both the departure and the arrival times, but these flights arrived on the following day. We can fix this by adding days(1) to the arrival time of each overnight flight.
flights_dt <- flights_dt |> mutate ( overnight = arr_time < dep_time, arr_time = arr_time + days ( if_else ( overnight, 0, 1 ) ), sched_arr_time = sched_arr_time + days ( overnight * 1 ) ) Now all of our flights obey the laws of physics.
flights_dt |> filter ( overnight, arr_time < dep_time ) #> # A tibble: 10,633 × 10 #> origin dest dep_delay arr_delay dep_time sched_dep_time #> <chr> <chr> <dbl> <dbl> <dttm> <dttm> #> 1 EWR BQN 9 -4 2013-01-01 19:29:00 2013-01-01 19:20:00 #> 2 JFK DFW 59 NA 2013-01-01 19:39:00 2013-01-01 18:40:00 #> 3 EWR TPA -2 9 2013-01-01 20:58:00 2013-01-01 21:00:00 #> 4 EWR SJU -6 -12 2013-01-01 21:02:00 2013-01-01 21:08:00 #> 5 EWR SFO 11 -14 2013-01-01 21:08:00 2013-01-01 20:57:00 #> 6 LGA FLL -10 -2 2013-01-01 21:20:00 2013-01-01 21:30:00 #> # … with 10,627 more rows, and 4 more variables: arr_time <dttm>, #> # sched_arr_time <dttm>, air_time <dbl>, overnight <lgl> Intervals
It's obvious what dyears(1) / ddays(365) should return: one, because durations are always represented by a number of seconds, and a duration of a year is defined as 365 days worth of seconds.
What should years(1) / days(1) return? Well, if the year was 2015 it should return 365, but if it was 2016, it should return 366! There's not quite enough information for lubridate to give a single clear answer. What it does instead is give an estimate:
If you want a more accurate measurement, you'll have to use an interval. An interval is a pair of starting and ending date times, or you can think of it as a duration with a starting point.
You can create an interval by writing start %--% end:
y2023 <- ymd ( "2023-01-01" ) %--% ymd ( "2024-01-01" ) y2024 <- ymd ( "2024-01-01" ) %--% ymd ( "2025-01-01" ) y2023 #> [1] 2023-01-01 UTC--2024-01-01 UTC y2024 #> [1] 2024-01-01 UTC--2025-01-01 UTC You could then divide it by days() to find out how many days fit in the year:
y2023 / days ( 1 ) #> [1] 365 y2024 / days ( 1 ) #> [1] 366 Summary
How do you pick between duration, periods, and intervals? As always, pick the simplest data structure that solves your problem. If you only care about physical time, use a duration; if you need to add human times, use a period; if you need to figure out how long a span is in human units, use an interval.
Exercises
-
Explain
days(overnight * 1)to someone who has just started learning R. How does it work? -
Create a vector of dates giving the first day of every month in 2015. Create a vector of dates giving the first day of every month in the current year.
-
Write a function that given your birthday (as a date), returns how old you are in years.
-
Why can't
(today() %--% (today() + years(1))) / months(1)work?
Time zones
Time zones are an enormously complicated topic because of their interaction with geopolitical entities. Fortunately we don't need to dig into all the details as they're not all important for data analysis, but there are a few challenges we'll need to tackle head on.
The first challenge is that everyday names of time zones tend to be ambiguous. For example, if you're American you're probably familiar with EST, or Eastern Standard Time. However, both Australia and Canada also have EST! To avoid confusion, R uses the international standard IANA time zones. These use a consistent naming scheme {area}/{location}, typically in the form {continent}/{city} or {ocean}/{city}. Examples include "America/New_York", "Europe/Paris", and "Pacific/Auckland".
You might wonder why the time zone uses a city, when typically you think of time zones as associated with a country or region within a country. This is because the IANA database has to record decades worth of time zone rules. Over the course of decades, countries change names (or break apart) fairly frequently, but city names tend to stay the same. Another problem is that the name needs to reflect not only the current behavior, but also the complete history. For example, there are time zones for both "America/New_York" and "America/Detroit". These cities both currently use Eastern Standard Time but in 1969-1972 Michigan (the state in which Detroit is located), did not follow DST, so it needs a different name. It's worth reading the raw time zone database (available at https://www.iana.org/time-zones) just to read some of these stories!
You can find out what R thinks your current time zone is with Sys.timezone():
(If R doesn't know, you'll get an NA.)
And see the complete list of all time zone names with OlsonNames():
length ( OlsonNames ( ) ) #> [1] 609 head ( OlsonNames ( ) ) #> [1] "Africa/Abidjan" "Africa/Accra" "Africa/Addis_Ababa" #> [4] "Africa/Algiers" "Africa/Asmara" "Africa/Asmera" In R, the time zone is an attribute of the date-time that only controls printing. For example, these three objects represent the same instant in time:
x1 <- ymd_hms ( "2024-06-01 12:00:00", tz = "America/New_York" ) x1 #> [1] "2024-06-01 12:00:00 EDT" x2 <- ymd_hms ( "2024-06-01 18:00:00", tz = "Europe/Copenhagen" ) x2 #> [1] "2024-06-01 18:00:00 CEST" x3 <- ymd_hms ( "2024-06-02 04:00:00", tz = "Pacific/Auckland" ) x3 #> [1] "2024-06-02 04:00:00 NZST" You can verify that they're the same time using subtraction:
x1 - x2 #> Time difference of 0 secs x1 - x3 #> Time difference of 0 secs Unless otherwise specified, lubridate always uses UTC. UTC (Coordinated Universal Time) is the standard time zone used by the scientific community and is roughly equivalent to GMT (Greenwich Mean Time). It does not have DST, which makes a convenient representation for computation. Operations that combine date-times, like c(), will often drop the time zone. In that case, the date-times will display in your local time zone:
x4 <- c ( x1, x2, x3 ) x4 #> [1] "2024-06-01 12:00:00 EDT" "2024-06-01 12:00:00 EDT" #> [3] "2024-06-01 12:00:00 EDT" You can change the time zone in two ways:
-
Keep the instant in time the same, and change how it's displayed. Use this when the instant is correct, but you want a more natural display.
x4a <- with_tz ( x4, tzone = "Australia/Lord_Howe" ) x4a #> [1] "2024-06-02 02:30:00 +1030" "2024-06-02 02:30:00 +1030" #> [3] "2024-06-02 02:30:00 +1030" x4a - x4 #> Time differences in secs #> [1] 0 0 0(This also illustrates another challenge of times zones: they're not all integer hour offsets!)
-
Change the underlying instant in time. Use this when you have an instant that has been labelled with the incorrect time zone, and you need to fix it.
x4b <- force_tz ( x4, tzone = "Australia/Lord_Howe" ) x4b #> [1] "2024-06-01 12:00:00 +1030" "2024-06-01 12:00:00 +1030" #> [3] "2024-06-01 12:00:00 +1030" x4b - x4 #> Time differences in hours #> [1] -14.5 -14.5 -14.5
-
A year is a leap year if it's divisible by 4, unless it's also divisible by 100, except if it's also divisible by 400. In other words, in every set of 400 years, there's 97 leap years.↩︎
Source: https://r4ds.hadley.nz/datetimes.html
0 Response to "Don t Know How to Automatically Pick Scale for Object of Type Labelled Defaulting to Continuous"
Post a Comment